[build-system]
requires = ["setuptools>=61.0", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "medvision_ds"
dynamic = ["version"]
description = "medvision_ds: a codebase for the MedVision dataset"
readme = "README.md"
requires-python = ">=3.9"
authors = [{ name = "Yongcheng Yao", email = "yc.yao@ed.ac.uk" }]
license = { text = "CC-BY 4.0" }
dependencies = [
    "nibabel",
    "numpy",
    "SimpleITK",
    # NOTE: a floor, never an exact pin. This package is reinstalled by the dataset loader
    # at load time, i.e. INSIDE a live eval/training process, so an exact pin silently mutates
    # the caller's environment mid-run: every process started afterwards (a spawned vLLM
    # worker, the next task) then imports a huggingface_hub the caller's transformers cannot
    # use. transformers 4.x requires huggingface_hub<1.0 and transformers 5.x requires
    # >=1.5.0, so no single version serves every model stack -- each launcher's frozen
    # requirements decide, and this floor must stay at or below the lowest of them (0.35.3),
    # otherwise pip UPGRADES those envs to the newest 1.x instead of leaving them alone.
    # Only snapshot_download / hf_hub_download are used here; both are stable across the range.
    "huggingface_hub>=0.35.3,<2.0",
    "synapseclient",
    "gdown",
    "gdrive",
    "requests",
    "scipy",
    "opencv-python",
    "matplotlib",
    "rarfile",
    "py7zr",
    "scikit-image",
    "pynrrd",
    "tqdm",
    "pandas",
    "datasets==3.6.0",
]

[project.optional-dependencies]
# Needed only for rebuilding datasets from original sources via the manually-run
# datasets/*/download_raw.py scripts. Kept out of the base dependencies because
# pydicom-seg requires numpy<2, which conflicts with the modern numpy 2.x stack:
#   pip install "medvision_ds[raw]"
raw = [
    # NOTE: pydicom is pinned <3 because pydicom-seg 0.4.1 imports the private
    # pydicom._storage_sopclass_uids module, which was removed in pydicom 3.x.
    "pydicom<3",
    "pydicom-seg",
    # NOTE: pylidc imports pkg_resources, which setuptools removed in 81.
    "pylidc",
    "setuptools<81",
]

[project.urls]
"License" = "https://creativecommons.org/licenses/by/4.0/"
"Homepage" = "https://medvision-vlm.github.io"

[tool.setuptools]
packages = [
    "medvision_ds",
    "medvision_ds.utils",
    "medvision_ds.datasets",
    "medvision_ds.datasets.AbdomenAtlas__1_0__Mini",
    "medvision_ds.datasets.AbdomenCT_1K",
    "medvision_ds.datasets.ACDC",
    "medvision_ds.datasets.AMOS22",
    "medvision_ds.datasets.autoPET_III",
    "medvision_ds.datasets.BCV15",
    "medvision_ds.datasets.BraTS24",
    "medvision_ds.datasets.CAMUS",
    "medvision_ds.datasets.Ceph_Biometrics_400",
    "medvision_ds.datasets.CrossMoDA",
    "medvision_ds.datasets.FLARE22",
    "medvision_ds.datasets.FeTA24",
    "medvision_ds.datasets.HNTSMRG24",
    "medvision_ds.datasets.ISLES24",
    "medvision_ds.datasets.KiPA22",
    "medvision_ds.datasets.KiTS23",
    "medvision_ds.datasets.MSD",
    "medvision_ds.datasets.OAIZIB_CM",
    "medvision_ds.datasets.SKM_TEA",
    "medvision_ds.datasets.ToothFairy2",
    "medvision_ds.datasets.TopCoW24",
    "medvision_ds.datasets.TotalSegmentator",
    "medvision_ds.datasets.AFIDs",
    "medvision_ds.datasets.DEEP_PSMA",
    "medvision_ds.datasets.LIDC_IDRI",
    "medvision_ds.datasets.LNQ2023",
    "medvision_ds.datasets.MAMA_MIA",
    "medvision_ds.datasets.PDDCA",
    "medvision_ds.datasets.PICAI",
    "medvision_ds.datasets.VerSe",
    "medvision_ds.datasets.MSWAL",
]
package-dir = { "" = "." }

[tool.setuptools.dynamic]
version = { attr = "medvision_ds.__version__" }