Ship the verified cell-type grouping so training needs no source rebuild
Browse files
README.md
CHANGED
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@@ -50,6 +50,7 @@ in the same conventions so the two compose.
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| `neurons/soma_position.i32` | 49,393 × 3 | int32 | soma location in 8 nm voxels |
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| `neurons/soma_valid.u8` | 49,393 | uint8 | 1 where a soma location exists |
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| `manifest.json` | — | — | shapes, dtypes, SHA-256 of every file, provenance |
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6,061,699 edges are positive, 2,988,473 negative, none zero. 44,279 of 49,393 neurons have a
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measured soma location; the remaining 5,114 are flagged in `soma_valid` and **their
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@@ -98,6 +99,19 @@ runs 18 such checks with nothing but NumPy:
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All 18 checks passed: 49,393 neurons, 9,050,172 edges, 44,279 positioned somata, 9,161 cell-type groups.
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```
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## Provenance, and one honest gap
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Derived from **MaleCNS v1.0 central brain** — superclasses `cb_sensory`,
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| `neurons/soma_position.i32` | 49,393 × 3 | int32 | soma location in 8 nm voxels |
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| `neurons/soma_valid.u8` | 49,393 | uint8 | 1 where a soma location exists |
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| `manifest.json` | — | — | shapes, dtypes, SHA-256 of every file, provenance |
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| `groups/groups.npz` | — | — | the cell-type grouping the trainer loads, so training needs no 1 GB source rebuild |
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6,061,699 edges are positive, 2,988,473 negative, none zero. 44,279 of 49,393 neurons have a
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measured soma location; the remaining 5,114 are flagged in `soma_valid` and **their
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All 18 checks passed: 49,393 neurons, 9,050,172 edges, 44,279 positioned somata, 9,161 cell-type groups.
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```
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## Training against it
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`groups/groups.npz` carries the verified neuron→cell-type grouping bound to this exact graph
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(`node_type_index`, body IDs, labels, and the frozen-buffer digests). It exists so that
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training a model on this connectome does not require re-deriving the grouping from the
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~1 GB of upstream MaleCNS feather files. The
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[fly-wordbrain pipeline](https://github.com/fernando-neto-ai/fly-wordbrain) fetches it
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straight from here:
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```bash
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python scripts/run_pipeline.py --quick # one command, Apple Silicon
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```
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## Provenance, and one honest gap
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Derived from **MaleCNS v1.0 central brain** — superclasses `cb_sensory`,
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