Datasets:

yg3191
/

AbAssayBench

split stringclasses 3 values	sample_id stringlengths 18 41	sample_id_scope stringclasses 3 values	row_index int64 0 20k ⌀	model stringclasses 21 values	model_family stringclasses 5 values	prediction_source stringclasses 2 values	model_output_row int64 0 2.84k	property_group stringclasses 6 values	endpoint_name stringclasses 68 values	assay_id stringclasses 81 values	assay_instruct_ref stringclasses 81 values	ab_id stringlengths 9 20 ⌀	pdb_path stringlengths 5 38	benchmark_property stringclasses 13 values	benchmark_unit stringclasses 6 values	source_property stringclasses 10 values	mapping_match_type stringclasses 8 values	y_true float64 -1.88 81k	y_pred float64 -110.68 569,949,494,949,495B ⌀	y_true_reported float64 -1.88 81k	y_true_normalized float64 -69.93 39.7 ⌀	y_pred_normalized float64 -4.21 616,161,616,161,616B ⌀	parse_status stringclasses 4 values	prediction_is_numeric bool 2 classes	endpoint_label stringclasses 68 values	endpoint stringclasses 6 values
prophet_ab_holdout	prophet_ab_holdout:0	holdout_row_index	0	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	0	expression	Titer	PROPHET_01_Titer	PROPHET_01_Titer	GDPa1-001	GDPa1-001.pdb	Titer	ug/mL; equivalent to mg/L	Expression titer (µg/mL)	exact_unit_proxy_assay	140.25	183.78949	140.25	-0.357551	-0.063295	ok	true	Titer	expression
prophet_ab_holdout	prophet_ab_holdout:1	holdout_row_index	1	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	1	aggregation	Purity	PROPHET_02_Purity	PROPHET_02_Purity	GDPa1-001	GDPa1-001.pdb	Purity	%	Red-CGE purity (%)	close_assay_family	98.53	99.70003	98.53	-2.67273	-0.5454	ok	true	Purity	aggregation
prophet_ab_holdout	prophet_ab_holdout:2	holdout_row_index	2	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	2	aggregation	SEC %Monomer	PROPHET_03_SEC__Monomer	PROPHET_03_SEC__Monomer	GDPa1-001	GDPa1-001.pdb	SEC %Monomer	%	SEC monomer (%)	exact	97.01	98.38237	97.01	-0.743747	0.113982	ok	true	SEC %Monomer	aggregation
prophet_ab_holdout	prophet_ab_holdout:3	holdout_row_index	3	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	3	polyreactivity	SMAC	PROPHET_04_SMAC	PROPHET_04_SMAC	GDPa1-001	GDPa1-001.pdb	SMAC	min	SMAC retention time (min)	exact	2.73	10.418449	2.73	-6.67027	1.641567	ok	true	SMAC	polyreactivity
prophet_ab_holdout	prophet_ab_holdout:4	holdout_row_index	4	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	4	aggregation	HIC	PROPHET_05_HIC	PROPHET_05_HIC	GDPa1-001	GDPa1-001.pdb	HIC	min	HIC retention time (min)	exact	2.59	9.009542	2.59	-0.544466	-0.133747	ok	true	HIC	aggregation
prophet_ab_holdout	prophet_ab_holdout:5	holdout_row_index	5	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	5	polyreactivity	PR_CHO	PROPHET_07_PR_CHO	PROPHET_07_PR_CHO	GDPa1-001	GDPa1-001.pdb	PR_CHO	unitless normalized score, 0-1	PSR score (0–1)	proxy_same_endpoint_scale	0.337837	0.569896	0.337837	0.714233	1.333056	ok	true	PR_CHO	polyreactivity
prophet_ab_holdout	prophet_ab_holdout:6	holdout_row_index	6	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	6	polyreactivity	PR_Ova	PROPHET_08_PR_Ova	PROPHET_08_PR_Ova	GDPa1-001	GDPa1-001.pdb	PR_Ova	unitless normalized score, 0-1	PSR score (0–1)	proxy_same_endpoint_scale	0.263108	0.568052	0.263108	0.514956	1.32814	ok	true	PR_Ova	polyreactivity
prophet_ab_holdout	prophet_ab_holdout:7	holdout_row_index	7	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	7	aggregation	AC-SINS_pH6.0	PROPHET_09_AC-SINS_pH6.0	PROPHET_09_AC-SINS_pH6.0	GDPa1-001	GDPa1-001.pdb	AC-SINS_pH6.0	nm	AC-SINS Δλmax (nm)	exact	0.35	29.376083	0.35	-0.13871	1.733941	ok	true	AC-SINS_pH6.0	aggregation
prophet_ab_holdout	prophet_ab_holdout:8	holdout_row_index	8	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	8	aggregation	AC-SINS_pH7.4	PROPHET_10_AC-SINS_pH7.4	PROPHET_10_AC-SINS_pH7.4	GDPa1-001	GDPa1-001.pdb	AC-SINS_pH7.4	nm	AC-SINS Δλmax (nm)	exact	2.125	29.329493	2.125	-0.024194	1.730935	ok	true	AC-SINS_pH7.4	aggregation
prophet_ab_holdout	prophet_ab_holdout:9	holdout_row_index	9	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	9	thermostability	Tonset	PROPHET_11_Tonset	PROPHET_11_Tonset	GDPa1-001	GDPa1-001.pdb	Tonset	degree C	Tm1 (nanoDSF)	proxy_same_modality	62.145	56.04138	62.145	0.77483	-0.055594	ok	true	Tonset	thermostability
prophet_ab_holdout	prophet_ab_holdout:10	holdout_row_index	10	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	10	thermostability	Tm1	PROPHET_12_Tm1	PROPHET_12_Tm1	GDPa1-001	GDPa1-001.pdb	Tm1	degree C	Tm1 (nanoDSF)	exact_family	69.535	55.729023	69.535	1.780273	-0.098092	ok	true	Tm1	thermostability
prophet_ab_holdout	prophet_ab_holdout:11	holdout_row_index	11	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	11	thermostability	Tm2	PROPHET_13_Tm2	PROPHET_13_Tm2	GDPa1-001	GDPa1-001.pdb	Tm2	degree C	DSF inflection point #2 (°C)	proxy_second_transition	83.08	75.10744	83.08	0.684685	-0.621223	ok	true	Tm2	thermostability
prophet_ab_holdout	prophet_ab_holdout:12	holdout_row_index	12	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	12	expression	Titer	PROPHET_01_Titer	PROPHET_01_Titer	GDPa1-002	GDPa1-002.pdb	Titer	ug/mL; equivalent to mg/L	Expression titer (µg/mL)	exact_unit_proxy_assay	193.31	83.27467	193.31	0.001048	-0.74261	ok	true	Titer	expression
prophet_ab_holdout	prophet_ab_holdout:13	holdout_row_index	13	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	13	aggregation	Purity	PROPHET_02_Purity	PROPHET_02_Purity	GDPa1-002	GDPa1-002.pdb	Purity	%	Red-CGE purity (%)	close_assay_family	99.825	100.20431	99.825	-0.318187	0.37147	ok	true	Purity	aggregation
prophet_ab_holdout	prophet_ab_holdout:14	holdout_row_index	14	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	14	aggregation	SEC %Monomer	PROPHET_03_SEC__Monomer	PROPHET_03_SEC__Monomer	GDPa1-002	GDPa1-002.pdb	SEC %Monomer	%	SEC monomer (%)	exact	97.62	98.69841	97.62	-0.362496	0.311508	ok	true	SEC %Monomer	aggregation
prophet_ab_holdout	prophet_ab_holdout:15	holdout_row_index	15	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	15	polyreactivity	SMAC	PROPHET_04_SMAC	PROPHET_04_SMAC	GDPa1-002	GDPa1-002.pdb	SMAC	min	SMAC retention time (min)	exact	2.745	8.494594	2.745	-6.654054	-0.438277	ok	true	SMAC	polyreactivity
prophet_ab_holdout	prophet_ab_holdout:16	holdout_row_index	16	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	16	aggregation	HIC	PROPHET_05_HIC	PROPHET_05_HIC	GDPa1-002	GDPa1-002.pdb	HIC	min	HIC retention time (min)	exact	2.545	6.497064	2.545	-0.547345	-0.294494	ok	true	HIC	aggregation
prophet_ab_holdout	prophet_ab_holdout:17	holdout_row_index	17	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	17	pharmacokinetics	HAC	PROPHET_06_HAC	PROPHET_06_HAC	GDPa1-002	GDPa1-002.pdb	HAC	min	Heparin retention time (min)	proxy_same_endpoint_unit	3.69	0.655005	3.69	20.733334	0.500036	ok	true	HAC	pharmacokinetics
prophet_ab_holdout	prophet_ab_holdout:18	holdout_row_index	18	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	18	polyreactivity	PR_CHO	PROPHET_07_PR_CHO	PROPHET_07_PR_CHO	GDPa1-002	GDPa1-002.pdb	PR_CHO	unitless normalized score, 0-1	PSR score (0–1)	proxy_same_endpoint_scale	0.205246	0.227897	0.205246	0.360657	0.421058	ok	true	PR_CHO	polyreactivity
prophet_ab_holdout	prophet_ab_holdout:19	holdout_row_index	19	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	19	polyreactivity	PR_Ova	PROPHET_08_PR_Ova	PROPHET_08_PR_Ova	GDPa1-002	GDPa1-002.pdb	PR_Ova	unitless normalized score, 0-1	PSR score (0–1)	proxy_same_endpoint_scale	0.100155	0.298078	0.100155	0.080414	0.608208	ok	true	PR_Ova	polyreactivity
prophet_ab_holdout	prophet_ab_holdout:20	holdout_row_index	20	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	20	aggregation	AC-SINS_pH6.0	PROPHET_09_AC-SINS_pH6.0	PROPHET_09_AC-SINS_pH6.0	GDPa1-002	GDPa1-002.pdb	AC-SINS_pH6.0	nm	AC-SINS Δλmax (nm)	exact	1.1	0.868104	1.1	-0.090323	-0.105284	ok	true	AC-SINS_pH6.0	aggregation
prophet_ab_holdout	prophet_ab_holdout:21	holdout_row_index	21	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	21	aggregation	AC-SINS_pH7.4	PROPHET_10_AC-SINS_pH7.4	PROPHET_10_AC-SINS_pH7.4	GDPa1-002	GDPa1-002.pdb	AC-SINS_pH7.4	nm	AC-SINS Δλmax (nm)	exact	1.5	0.864436	1.5	-0.064516	-0.10552	ok	true	AC-SINS_pH7.4	aggregation
prophet_ab_holdout	prophet_ab_holdout:22	holdout_row_index	22	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	22	thermostability	Tonset	PROPHET_11_Tonset	PROPHET_11_Tonset	GDPa1-002	GDPa1-002.pdb	Tonset	degree C	Tm1 (nanoDSF)	proxy_same_modality	60.63	55.580765	60.63	0.568708	-0.118264	ok	true	Tonset	thermostability
prophet_ab_holdout	prophet_ab_holdout:23	holdout_row_index	23	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	23	thermostability	Tm1	PROPHET_12_Tm1	PROPHET_12_Tm1	GDPa1-002	GDPa1-002.pdb	Tm1	degree C	Tm1 (nanoDSF)	exact_family	69.93	55.25904	69.93	1.834014	-0.162036	ok	true	Tm1	thermostability
prophet_ab_holdout	prophet_ab_holdout:24	holdout_row_index	24	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	24	thermostability	Tm2	PROPHET_13_Tm2	PROPHET_13_Tm2	GDPa1-002	GDPa1-002.pdb	Tm2	degree C	DSF inflection point #2 (°C)	proxy_second_transition	80.33	81.81166	80.33	0.234234	0.47693	ok	true	Tm2	thermostability
prophet_ab_holdout	prophet_ab_holdout:25	holdout_row_index	25	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	25	expression	Titer	PROPHET_01_Titer	PROPHET_01_Titer	GDPa1-003	GDPa1-003.pdb	Titer	ug/mL; equivalent to mg/L	Expression titer (µg/mL)	exact_unit_proxy_assay	114.75	80.51498	114.75	-0.529889	-0.761261	ok	true	Titer	expression
prophet_ab_holdout	prophet_ab_holdout:26	holdout_row_index	26	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	26	aggregation	Purity	PROPHET_02_Purity	PROPHET_02_Purity	GDPa1-003	GDPa1-003.pdb	Purity	%	Red-CGE purity (%)	close_assay_family	98.35	100.21044	98.35	-3.000003	0.382617	ok	true	Purity	aggregation
prophet_ab_holdout	prophet_ab_holdout:27	holdout_row_index	27	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	27	aggregation	SEC %Monomer	PROPHET_03_SEC__Monomer	PROPHET_03_SEC__Monomer	GDPa1-003	GDPa1-003.pdb	SEC %Monomer	%	SEC monomer (%)	exact	89.055	98.420395	89.055	-5.715623	0.137748	ok	true	SEC %Monomer	aggregation
prophet_ab_holdout	prophet_ab_holdout:28	holdout_row_index	28	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	28	polyreactivity	SMAC	PROPHET_04_SMAC	PROPHET_04_SMAC	GDPa1-003	GDPa1-003.pdb	SMAC	min	SMAC retention time (min)	exact	2.74	9.919096	2.74	-6.659459	1.101726	ok	true	SMAC	polyreactivity
prophet_ab_holdout	prophet_ab_holdout:29	holdout_row_index	29	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	29	aggregation	HIC	PROPHET_05_HIC	PROPHET_05_HIC	GDPa1-003	GDPa1-003.pdb	HIC	min	HIC retention time (min)	exact	2.705	11.070738	2.705	-0.537108	-0.001872	ok	true	HIC	aggregation
prophet_ab_holdout	prophet_ab_holdout:30	holdout_row_index	30	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	30	polyreactivity	PR_CHO	PROPHET_07_PR_CHO	PROPHET_07_PR_CHO	GDPa1-003	GDPa1-003.pdb	PR_CHO	unitless normalized score, 0-1	PSR score (0–1)	proxy_same_endpoint_scale	0.138773	-0.056717	0.138773	0.183394	-0.337913	ok	true	PR_CHO	polyreactivity
prophet_ab_holdout	prophet_ab_holdout:31	holdout_row_index	31	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	31	polyreactivity	PR_Ova	PROPHET_08_PR_Ova	PROPHET_08_PR_Ova	GDPa1-003	GDPa1-003.pdb	PR_Ova	unitless normalized score, 0-1	PSR score (0–1)	proxy_same_endpoint_scale	0.10118	-0.0572	0.10118	0.083146	-0.3392	ok	true	PR_Ova	polyreactivity
prophet_ab_holdout	prophet_ab_holdout:32	holdout_row_index	32	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	32	aggregation	AC-SINS_pH6.0	PROPHET_09_AC-SINS_pH6.0	PROPHET_09_AC-SINS_pH6.0	GDPa1-003	GDPa1-003.pdb	AC-SINS_pH6.0	nm	AC-SINS Δλmax (nm)	exact	0.75	-3.922253	0.75	-0.112903	-0.414339	ok	true	AC-SINS_pH6.0	aggregation
prophet_ab_holdout	prophet_ab_holdout:33	holdout_row_index	33	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	33	aggregation	AC-SINS_pH7.4	PROPHET_10_AC-SINS_pH7.4	PROPHET_10_AC-SINS_pH7.4	GDPa1-003	GDPa1-003.pdb	AC-SINS_pH7.4	nm	AC-SINS Δλmax (nm)	exact	1	-3.973882	1	-0.096774	-0.41767	ok	true	AC-SINS_pH7.4	aggregation
prophet_ab_holdout	prophet_ab_holdout:34	holdout_row_index	34	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	34	thermostability	Tonset	PROPHET_11_Tonset	PROPHET_11_Tonset	GDPa1-003	GDPa1-003.pdb	Tonset	degree C	Tm1 (nanoDSF)	proxy_same_modality	57.36	51.298508	57.36	0.12381	-0.700883	ok	true	Tonset	thermostability
prophet_ab_holdout	prophet_ab_holdout:35	holdout_row_index	35	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	35	thermostability	Tm1	PROPHET_12_Tm1	PROPHET_12_Tm1	GDPa1-003	GDPa1-003.pdb	Tm1	degree C	Tm1 (nanoDSF)	exact_family	68.765	50.956635	68.765	1.67551	-0.747397	ok	true	Tm1	thermostability
prophet_ab_holdout	prophet_ab_holdout:36	holdout_row_index	36	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	36	thermostability	Tm2	PROPHET_13_Tm2	PROPHET_13_Tm2	GDPa1-003	GDPa1-003.pdb	Tm2	degree C	DSF inflection point #2 (°C)	proxy_second_transition	85.03	82.60487	85.03	1.004095	0.606859	ok	true	Tm2	thermostability
prophet_ab_holdout	prophet_ab_holdout:37	holdout_row_index	37	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	37	expression	Titer	PROPHET_01_Titer	PROPHET_01_Titer	GDPa1-004	GDPa1-004.pdb	Titer	ug/mL; equivalent to mg/L	Expression titer (µg/mL)	exact_unit_proxy_assay	327.32	155.69551	327.32	0.906735	-0.253165	ok	true	Titer	expression
prophet_ab_holdout	prophet_ab_holdout:38	holdout_row_index	38	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	38	aggregation	Purity	PROPHET_02_Purity	PROPHET_02_Purity	GDPa1-004	GDPa1-004.pdb	Purity	%	Red-CGE purity (%)	close_assay_family	98.575	100.05678	98.575	-2.590915	0.103238	ok	true	Purity	aggregation
prophet_ab_holdout	prophet_ab_holdout:39	holdout_row_index	39	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	39	aggregation	SEC %Monomer	PROPHET_03_SEC__Monomer	PROPHET_03_SEC__Monomer	GDPa1-004	GDPa1-004.pdb	SEC %Monomer	%	SEC monomer (%)	exact	98.605	97.99232	98.605	0.253129	-0.1298	ok	true	SEC %Monomer	aggregation
prophet_ab_holdout	prophet_ab_holdout:40	holdout_row_index	40	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	40	polyreactivity	SMAC	PROPHET_04_SMAC	PROPHET_04_SMAC	GDPa1-004	GDPa1-004.pdb	SMAC	min	SMAC retention time (min)	exact	2.715	8.296826	2.715	-6.686486	-0.65208	ok	true	SMAC	polyreactivity
prophet_ab_holdout	prophet_ab_holdout:41	holdout_row_index	41	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	41	aggregation	HIC	PROPHET_05_HIC	PROPHET_05_HIC	GDPa1-004	GDPa1-004.pdb	HIC	min	HIC retention time (min)	exact	2.565	6.401379	2.565	-0.546065	-0.300616	ok	true	HIC	aggregation
prophet_ab_holdout	prophet_ab_holdout:42	holdout_row_index	42	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	42	pharmacokinetics	HAC	PROPHET_06_HAC	PROPHET_06_HAC	GDPa1-004	GDPa1-004.pdb	HAC	min	Heparin retention time (min)	proxy_same_endpoint_unit	1.005	0.564696	1.005	2.833333	-0.10203	ok	true	HAC	pharmacokinetics
prophet_ab_holdout	prophet_ab_holdout:43	holdout_row_index	43	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	43	polyreactivity	PR_CHO	PROPHET_07_PR_CHO	PROPHET_07_PR_CHO	GDPa1-004	GDPa1-004.pdb	PR_CHO	unitless normalized score, 0-1	PSR score (0–1)	proxy_same_endpoint_scale	0	-0.026852	0	-0.186667	-0.258272	ok	true	PR_CHO	polyreactivity
prophet_ab_holdout	prophet_ab_holdout:44	holdout_row_index	44	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	44	polyreactivity	PR_Ova	PROPHET_08_PR_Ova	PROPHET_08_PR_Ova	GDPa1-004	GDPa1-004.pdb	PR_Ova	unitless normalized score, 0-1	PSR score (0–1)	proxy_same_endpoint_scale	0.054971	-0.033014	0.054971	-0.040078	-0.274703	ok	true	PR_Ova	polyreactivity
prophet_ab_holdout	prophet_ab_holdout:45	holdout_row_index	45	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	45	aggregation	AC-SINS_pH6.0	PROPHET_09_AC-SINS_pH6.0	PROPHET_09_AC-SINS_pH6.0	GDPa1-004	GDPa1-004.pdb	AC-SINS_pH6.0	nm	AC-SINS Δλmax (nm)	exact	0.46	-3.151158	0.46	-0.131613	-0.364591	ok	true	AC-SINS_pH6.0	aggregation
prophet_ab_holdout	prophet_ab_holdout:46	holdout_row_index	46	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	46	aggregation	AC-SINS_pH7.4	PROPHET_10_AC-SINS_pH7.4	PROPHET_10_AC-SINS_pH7.4	GDPa1-004	GDPa1-004.pdb	AC-SINS_pH7.4	nm	AC-SINS Δλmax (nm)	exact	-0.375	-3.181067	-0.375	-0.185484	-0.36652	ok	true	AC-SINS_pH7.4	aggregation
prophet_ab_holdout	prophet_ab_holdout:47	holdout_row_index	47	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	47	thermostability	Tonset	PROPHET_11_Tonset	PROPHET_11_Tonset	GDPa1-004	GDPa1-004.pdb	Tonset	degree C	Tm1 (nanoDSF)	proxy_same_modality	64.175	53.21326	64.175	1.051021	-0.440373	ok	true	Tonset	thermostability
prophet_ab_holdout	prophet_ab_holdout:48	holdout_row_index	48	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	48	thermostability	Tm1	PROPHET_12_Tm1	PROPHET_12_Tm1	GDPa1-004	GDPa1-004.pdb	Tm1	degree C	Tm1 (nanoDSF)	exact_family	72.38	53.253685	72.38	2.167347	-0.434873	ok	true	Tm1	thermostability
prophet_ab_holdout	prophet_ab_holdout:49	holdout_row_index	49	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	49	thermostability	Tm2	PROPHET_13_Tm2	PROPHET_13_Tm2	GDPa1-004	GDPa1-004.pdb	Tm2	degree C	DSF inflection point #2 (°C)	proxy_second_transition	75.93	79.40328	75.93	-0.486487	0.082438	ok	true	Tm2	thermostability
prophet_ab_holdout	prophet_ab_holdout:50	holdout_row_index	50	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	50	expression	Titer	PROPHET_01_Titer	PROPHET_01_Titer	GDPa1-005	GDPa1-005.pdb	Titer	ug/mL; equivalent to mg/L	Expression titer (µg/mL)	exact_unit_proxy_assay	313.39	332.05707	313.39	0.812591	0.93875	ok	true	Titer	expression
prophet_ab_holdout	prophet_ab_holdout:51	holdout_row_index	51	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	51	aggregation	Purity	PROPHET_02_Purity	PROPHET_02_Purity	GDPa1-005	GDPa1-005.pdb	Purity	%	Red-CGE purity (%)	close_assay_family	99.3	99.964874	99.3	-1.272722	-0.063871	ok	true	Purity	aggregation
prophet_ab_holdout	prophet_ab_holdout:52	holdout_row_index	52	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	52	aggregation	SEC %Monomer	PROPHET_03_SEC__Monomer	PROPHET_03_SEC__Monomer	GDPa1-005	GDPa1-005.pdb	SEC %Monomer	%	SEC monomer (%)	exact	96.12	98.17787	96.12	-1.299996	-0.01383	ok	true	SEC %Monomer	aggregation
prophet_ab_holdout	prophet_ab_holdout:53	holdout_row_index	53	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	53	polyreactivity	SMAC	PROPHET_04_SMAC	PROPHET_04_SMAC	GDPa1-005	GDPa1-005.pdb	SMAC	min	SMAC retention time (min)	exact	2.705	9.325324	2.705	-6.697297	0.45981	ok	true	SMAC	polyreactivity
prophet_ab_holdout	prophet_ab_holdout:54	holdout_row_index	54	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	54	aggregation	HIC	PROPHET_05_HIC	PROPHET_05_HIC	GDPa1-005	GDPa1-005.pdb	HIC	min	HIC retention time (min)	exact	2.495	12.259631	2.495	-0.550544	0.074193	ok	true	HIC	aggregation
prophet_ab_holdout	prophet_ab_holdout:55	holdout_row_index	55	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	55	polyreactivity	PR_CHO	PROPHET_07_PR_CHO	PROPHET_07_PR_CHO	GDPa1-005	GDPa1-005.pdb	PR_CHO	unitless normalized score, 0-1	PSR score (0–1)	proxy_same_endpoint_scale	0.183387	0.062328	0.183387	0.302365	-0.020458	ok	true	PR_CHO	polyreactivity
prophet_ab_holdout	prophet_ab_holdout:56	holdout_row_index	56	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	56	polyreactivity	PR_Ova	PROPHET_08_PR_Ova	PROPHET_08_PR_Ova	GDPa1-005	GDPa1-005.pdb	PR_Ova	unitless normalized score, 0-1	PSR score (0–1)	proxy_same_endpoint_scale	0.085628	0.07927	0.085628	0.041674	0.024721	ok	true	PR_Ova	polyreactivity
prophet_ab_holdout	prophet_ab_holdout:57	holdout_row_index	57	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	57	aggregation	AC-SINS_pH6.0	PROPHET_09_AC-SINS_pH6.0	PROPHET_09_AC-SINS_pH6.0	GDPa1-005	GDPa1-005.pdb	AC-SINS_pH6.0	nm	AC-SINS Δλmax (nm)	exact	0.61	5.32035	0.61	-0.121935	0.181958	ok	true	AC-SINS_pH6.0	aggregation
prophet_ab_holdout	prophet_ab_holdout:58	holdout_row_index	58	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	58	aggregation	AC-SINS_pH7.4	PROPHET_10_AC-SINS_pH7.4	PROPHET_10_AC-SINS_pH7.4	GDPa1-005	GDPa1-005.pdb	AC-SINS_pH7.4	nm	AC-SINS Δλmax (nm)	exact	7.5	5.326114	7.5	0.322581	0.18233	ok	true	AC-SINS_pH7.4	aggregation
prophet_ab_holdout	prophet_ab_holdout:59	holdout_row_index	59	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	59	thermostability	Tonset	PROPHET_11_Tonset	PROPHET_11_Tonset	GDPa1-005	GDPa1-005.pdb	Tonset	degree C	Tm1 (nanoDSF)	proxy_same_modality	62.35	53.806816	62.35	0.802721	-0.359617	ok	true	Tonset	thermostability
prophet_ab_holdout	prophet_ab_holdout:60	holdout_row_index	60	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	60	thermostability	Tm1	PROPHET_12_Tm1	PROPHET_12_Tm1	GDPa1-005	GDPa1-005.pdb	Tm1	degree C	Tm1 (nanoDSF)	exact_family	72	53.683483	72	2.115646	-0.376397	ok	true	Tm1	thermostability
prophet_ab_holdout	prophet_ab_holdout:61	holdout_row_index	61	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	61	thermostability	Tm2	PROPHET_13_Tm2	PROPHET_13_Tm2	GDPa1-005	GDPa1-005.pdb	Tm2	degree C	DSF inflection point #2 (°C)	proxy_second_transition	84.84	74.586784	84.84	0.972972	-0.706506	ok	true	Tm2	thermostability
prophet_ab_holdout	prophet_ab_holdout:62	holdout_row_index	62	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	62	expression	Titer	PROPHET_01_Titer	PROPHET_01_Titer	GDPa1-006	GDPa1-006.pdb	Titer	ug/mL; equivalent to mg/L	Expression titer (µg/mL)	exact_unit_proxy_assay	367.3	182.5897	367.3	1.176934	-0.071404	ok	true	Titer	expression
prophet_ab_holdout	prophet_ab_holdout:63	holdout_row_index	63	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	63	aggregation	Purity	PROPHET_02_Purity	PROPHET_02_Purity	GDPa1-006	GDPa1-006.pdb	Purity	%	Red-CGE purity (%)	close_assay_family	91.565	99.19974	91.565	-15.336359	-1.455026	ok	true	Purity	aggregation
prophet_ab_holdout	prophet_ab_holdout:64	holdout_row_index	64	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	64	aggregation	SEC %Monomer	PROPHET_03_SEC__Monomer	PROPHET_03_SEC__Monomer	GDPa1-006	GDPa1-006.pdb	SEC %Monomer	%	SEC monomer (%)	exact	99.84	97.600174	99.84	1.025	-0.374888	ok	true	SEC %Monomer	aggregation
prophet_ab_holdout	prophet_ab_holdout:65	holdout_row_index	65	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	65	polyreactivity	SMAC	PROPHET_04_SMAC	PROPHET_04_SMAC	GDPa1-006	GDPa1-006.pdb	SMAC	min	SMAC retention time (min)	exact	2.725	8.014624	2.725	-6.675675	-0.957163	ok	true	SMAC	polyreactivity
prophet_ab_holdout	prophet_ab_holdout:66	holdout_row_index	66	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	66	aggregation	HIC	PROPHET_05_HIC	PROPHET_05_HIC	GDPa1-006	GDPa1-006.pdb	HIC	min	HIC retention time (min)	exact	2.46	5.110525	2.46	-0.552783	-0.383204	ok	true	HIC	aggregation
prophet_ab_holdout	prophet_ab_holdout:67	holdout_row_index	67	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	67	polyreactivity	PR_CHO	PROPHET_07_PR_CHO	PROPHET_07_PR_CHO	GDPa1-006	GDPa1-006.pdb	PR_CHO	unitless normalized score, 0-1	PSR score (0–1)	proxy_same_endpoint_scale	0.338749	0.496374	0.338749	0.716664	1.136998	ok	true	PR_CHO	polyreactivity
prophet_ab_holdout	prophet_ab_holdout:68	holdout_row_index	68	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	68	polyreactivity	PR_Ova	PROPHET_08_PR_Ova	PROPHET_08_PR_Ova	GDPa1-006	GDPa1-006.pdb	PR_Ova	unitless normalized score, 0-1	PSR score (0–1)	proxy_same_endpoint_scale	0.311388	0.58988	0.311388	0.643701	1.386346	ok	true	PR_Ova	polyreactivity
prophet_ab_holdout	prophet_ab_holdout:69	holdout_row_index	69	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	69	aggregation	AC-SINS_pH6.0	PROPHET_09_AC-SINS_pH6.0	PROPHET_09_AC-SINS_pH6.0	GDPa1-006	GDPa1-006.pdb	AC-SINS_pH6.0	nm	AC-SINS Δλmax (nm)	exact	1.36	28.98588	1.36	-0.073548	1.708767	ok	true	AC-SINS_pH6.0	aggregation
prophet_ab_holdout	prophet_ab_holdout:70	holdout_row_index	70	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	70	aggregation	AC-SINS_pH7.4	PROPHET_10_AC-SINS_pH7.4	PROPHET_10_AC-SINS_pH7.4	GDPa1-006	GDPa1-006.pdb	AC-SINS_pH7.4	nm	AC-SINS Δλmax (nm)	exact	27	28.956932	27	1.580645	1.706899	ok	true	AC-SINS_pH7.4	aggregation
prophet_ab_holdout	prophet_ab_holdout:71	holdout_row_index	71	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	71	thermostability	Tonset	PROPHET_11_Tonset	PROPHET_11_Tonset	GDPa1-006	GDPa1-006.pdb	Tonset	degree C	Tm1 (nanoDSF)	proxy_same_modality	61.605	50.15858	61.605	0.70136	-0.855975	ok	true	Tonset	thermostability
prophet_ab_holdout	prophet_ab_holdout:72	holdout_row_index	72	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	72	thermostability	Tm1	PROPHET_12_Tm1	PROPHET_12_Tm1	GDPa1-006	GDPa1-006.pdb	Tm1	degree C	Tm1 (nanoDSF)	exact_family	70.505	49.924313	70.505	1.912244	-0.887849	ok	true	Tm1	thermostability
prophet_ab_holdout	prophet_ab_holdout:73	holdout_row_index	73	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	73	thermostability	Tm2	PROPHET_13_Tm2	PROPHET_13_Tm2	GDPa1-006	GDPa1-006.pdb	Tm2	degree C	DSF inflection point #2 (°C)	proxy_second_transition	85.88	76.56121	85.88	1.143325	-0.383094	ok	true	Tm2	thermostability
prophet_ab_holdout	prophet_ab_holdout:74	holdout_row_index	74	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	74	expression	Titer	PROPHET_01_Titer	PROPHET_01_Titer	GDPa1-007	GDPa1-007.pdb	Titer	ug/mL; equivalent to mg/L	Expression titer (µg/mL)	exact_unit_proxy_assay	190.23	112.22175	190.23	-0.019768	-0.546976	ok	true	Titer	expression
prophet_ab_holdout	prophet_ab_holdout:75	holdout_row_index	75	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	75	aggregation	Purity	PROPHET_02_Purity	PROPHET_02_Purity	GDPa1-007	GDPa1-007.pdb	Purity	%	Red-CGE purity (%)	close_assay_family	90.865	100.14487	90.865	-16.609095	0.263388	ok	true	Purity	aggregation
prophet_ab_holdout	prophet_ab_holdout:76	holdout_row_index	76	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	76	aggregation	SEC %Monomer	PROPHET_03_SEC__Monomer	PROPHET_03_SEC__Monomer	GDPa1-007	GDPa1-007.pdb	SEC %Monomer	%	SEC monomer (%)	exact	96.055	97.9712	96.055	-1.340623	-0.142997	ok	true	SEC %Monomer	aggregation
prophet_ab_holdout	prophet_ab_holdout:77	holdout_row_index	77	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	77	polyreactivity	SMAC	PROPHET_04_SMAC	PROPHET_04_SMAC	GDPa1-007	GDPa1-007.pdb	SMAC	min	SMAC retention time (min)	exact	2.7	8.519233	2.7	-6.702703	-0.41164	ok	true	SMAC	polyreactivity
prophet_ab_holdout	prophet_ab_holdout:78	holdout_row_index	78	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	78	aggregation	HIC	PROPHET_05_HIC	PROPHET_05_HIC	GDPa1-007	GDPa1-007.pdb	HIC	min	HIC retention time (min)	exact	2.45	4.639226	2.45	-0.553423	-0.413357	ok	true	HIC	aggregation
prophet_ab_holdout	prophet_ab_holdout:79	holdout_row_index	79	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	79	polyreactivity	PR_CHO	PROPHET_07_PR_CHO	PROPHET_07_PR_CHO	GDPa1-007	GDPa1-007.pdb	PR_CHO	unitless normalized score, 0-1	PSR score (0–1)	proxy_same_endpoint_scale	0.162423	-0.067052	0.162423	0.246461	-0.365472	ok	true	PR_CHO	polyreactivity
prophet_ab_holdout	prophet_ab_holdout:80	holdout_row_index	80	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	80	polyreactivity	PR_Ova	PROPHET_08_PR_Ova	PROPHET_08_PR_Ova	GDPa1-007	GDPa1-007.pdb	PR_Ova	unitless normalized score, 0-1	PSR score (0–1)	proxy_same_endpoint_scale	0.131834	-0.062887	0.131834	0.16489	-0.354365	ok	true	PR_Ova	polyreactivity
prophet_ab_holdout	prophet_ab_holdout:81	holdout_row_index	81	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	81	aggregation	AC-SINS_pH6.0	PROPHET_09_AC-SINS_pH6.0	PROPHET_09_AC-SINS_pH6.0	GDPa1-007	GDPa1-007.pdb	AC-SINS_pH6.0	nm	AC-SINS Δλmax (nm)	exact	0.1	-3.948032	0.1	-0.154839	-0.416002	ok	true	AC-SINS_pH6.0	aggregation
prophet_ab_holdout	prophet_ab_holdout:82	holdout_row_index	82	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	82	aggregation	AC-SINS_pH7.4	PROPHET_10_AC-SINS_pH7.4	PROPHET_10_AC-SINS_pH7.4	GDPa1-007	GDPa1-007.pdb	AC-SINS_pH7.4	nm	AC-SINS Δλmax (nm)	exact	-1.375	-3.942647	-1.375	-0.25	-0.415655	ok	true	AC-SINS_pH7.4	aggregation
prophet_ab_holdout	prophet_ab_holdout:83	holdout_row_index	83	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	83	thermostability	Tonset	PROPHET_11_Tonset	PROPHET_11_Tonset	GDPa1-007	GDPa1-007.pdb	Tonset	degree C	Tm1 (nanoDSF)	proxy_same_modality	57.92	53.313946	57.92	0.2	-0.426674	ok	true	Tonset	thermostability
prophet_ab_holdout	prophet_ab_holdout:84	holdout_row_index	84	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	84	thermostability	Tm1	PROPHET_12_Tm1	PROPHET_12_Tm1	GDPa1-007	GDPa1-007.pdb	Tm1	degree C	Tm1 (nanoDSF)	exact_family	71.63	53.24108	71.63	2.065306	-0.436588	ok	true	Tm1	thermostability
prophet_ab_holdout	prophet_ab_holdout:85	holdout_row_index	85	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	85	thermostability	Tm2	PROPHET_13_Tm2	PROPHET_13_Tm2	GDPa1-007	GDPa1-007.pdb	Tm2	degree C	DSF inflection point #2 (°C)	proxy_second_transition	80.75	81.84178	80.75	0.30303	0.481864	ok	true	Tm2	thermostability
prophet_ab_holdout	prophet_ab_holdout:86	holdout_row_index	86	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	86	expression	Titer	PROPHET_01_Titer	PROPHET_01_Titer	GDPa1-008	GDPa1-008.pdb	Titer	ug/mL; equivalent to mg/L	Expression titer (µg/mL)	exact_unit_proxy_assay	89.39	82.29974	89.39	-0.701281	-0.749199	ok	true	Titer	expression
prophet_ab_holdout	prophet_ab_holdout:87	holdout_row_index	87	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	87	aggregation	Purity	PROPHET_02_Purity	PROPHET_02_Purity	GDPa1-008	GDPa1-008.pdb	Purity	%	Red-CGE purity (%)	close_assay_family	100	99.75083	100	0	-0.45304	ok	true	Purity	aggregation
prophet_ab_holdout	prophet_ab_holdout:88	holdout_row_index	88	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	88	aggregation	SEC %Monomer	PROPHET_03_SEC__Monomer	PROPHET_03_SEC__Monomer	GDPa1-008	GDPa1-008.pdb	SEC %Monomer	%	SEC monomer (%)	exact	96.72	97.422966	96.72	-0.924997	-0.485644	ok	true	SEC %Monomer	aggregation
prophet_ab_holdout	prophet_ab_holdout:89	holdout_row_index	89	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	89	polyreactivity	SMAC	PROPHET_04_SMAC	PROPHET_04_SMAC	GDPa1-008	GDPa1-008.pdb	SMAC	min	SMAC retention time (min)	exact	2.71	8.626989	2.71	-6.691891	-0.295146	ok	true	SMAC	polyreactivity
prophet_ab_holdout	prophet_ab_holdout:90	holdout_row_index	90	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	90	aggregation	HIC	PROPHET_05_HIC	PROPHET_05_HIC	GDPa1-008	GDPa1-008.pdb	HIC	min	HIC retention time (min)	exact	2.535	5.831357	2.535	-0.547985	-0.337085	ok	true	HIC	aggregation
prophet_ab_holdout	prophet_ab_holdout:91	holdout_row_index	91	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	91	aggregation	AC-SINS_pH6.0	PROPHET_09_AC-SINS_pH6.0	PROPHET_09_AC-SINS_pH6.0	GDPa1-008	GDPa1-008.pdb	AC-SINS_pH6.0	nm	AC-SINS Δλmax (nm)	exact	-0.14	2.718591	-0.14	-0.170323	0.014103	ok	true	AC-SINS_pH6.0	aggregation
prophet_ab_holdout	prophet_ab_holdout:92	holdout_row_index	92	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	92	aggregation	AC-SINS_pH7.4	PROPHET_10_AC-SINS_pH7.4	PROPHET_10_AC-SINS_pH7.4	GDPa1-008	GDPa1-008.pdb	AC-SINS_pH7.4	nm	AC-SINS Δλmax (nm)	exact	3.125	2.711048	3.125	0.040323	0.013616	ok	true	AC-SINS_pH7.4	aggregation
prophet_ab_holdout	prophet_ab_holdout:93	holdout_row_index	93	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	93	thermostability	Tonset	PROPHET_11_Tonset	PROPHET_11_Tonset	GDPa1-008	GDPa1-008.pdb	Tonset	degree C	Tm1 (nanoDSF)	proxy_same_modality	62.51	55.015198	62.51	0.82449	-0.195212	ok	true	Tonset	thermostability
prophet_ab_holdout	prophet_ab_holdout:94	holdout_row_index	94	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	94	thermostability	Tm1	PROPHET_12_Tm1	PROPHET_12_Tm1	GDPa1-008	GDPa1-008.pdb	Tm1	degree C	Tm1 (nanoDSF)	exact_family	74.15	54.921715	74.15	2.408163	-0.20793	ok	true	Tm1	thermostability
prophet_ab_holdout	prophet_ab_holdout:95	holdout_row_index	95	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	95	thermostability	Tm2	PROPHET_13_Tm2	PROPHET_13_Tm2	GDPa1-008	GDPa1-008.pdb	Tm2	degree C	DSF inflection point #2 (°C)	proxy_second_transition	77.64	78.2335	77.64	-0.206389	-0.109174	ok	true	Tm2	thermostability
prophet_ab_holdout	prophet_ab_holdout:96	holdout_row_index	96	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	96	expression	Titer	PROPHET_01_Titer	PROPHET_01_Titer	GDPa1-009	GDPa1-009.pdb	Titer	ug/mL; equivalent to mg/L	Expression titer (µg/mL)	exact_unit_proxy_assay	224.95	301.58627	224.95	0.214882	0.732817	ok	true	Titer	expression
prophet_ab_holdout	prophet_ab_holdout:97	holdout_row_index	97	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	97	aggregation	Purity	PROPHET_02_Purity	PROPHET_02_Purity	GDPa1-009	GDPa1-009.pdb	Purity	%	Red-CGE purity (%)	close_assay_family	99.65	100.1406	99.65	-0.636361	0.255636	ok	true	Purity	aggregation
prophet_ab_holdout	prophet_ab_holdout:98	holdout_row_index	98	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	98	aggregation	SEC %Monomer	PROPHET_03_SEC__Monomer	PROPHET_03_SEC__Monomer	GDPa1-009	GDPa1-009.pdb	SEC %Monomer	%	SEC monomer (%)	exact	97.44	98.74451	97.44	-0.474997	0.340319	ok	true	SEC %Monomer	aggregation
prophet_ab_holdout	prophet_ab_holdout:99	holdout_row_index	99	MAP-Ab (assay-aligned)	MAP-Ab	predictions_transfer.csv	99	polyreactivity	SMAC	PROPHET_04_SMAC	PROPHET_04_SMAC	GDPa1-009	GDPa1-009.pdb	SMAC	min	SMAC retention time (min)	exact	2.735	9.282456	2.735	-6.664865	0.413467	ok	true	SMAC	polyreactivity

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AbAssayBench

This dataset repository contains the processed data package for AbAssayBench, a multi-endpoint antibody developability benchmark. The release combines the FLAb2.0-derived antibody measurements used for model development with the PROPHET-Ab measurements used for external validation.

The repository is intended to be used together with the MAP-Ab source code: https://github.com/gu-yaowen/MAP-Ab.

Package layout

Path	Contents
`tables/`	Release tables with stable IDs and repository-relative file references.
`assay_metadata/`	One JSON file per referenced assay metadata record.
`structures/`	Antibody PDB files used by the processed structure features.
`features/`	Precomputed sequence, structure, and assay-metadata feature stores.
`splits/`	Long-format split assignments and split-size summaries.
`results/`	Model predictions, endpoint metrics, tables, and publication figures.
`schemas/`	Machine-readable description of the release contract.
`manifests/`	Dataset, assay, structure, metadata, and file manifests.

Main tables

tables/flab2_measurements.csv and tables/prophet_ab_measurements.csv retain the measurement-level labels and canonical assay columns. Both tables add the following release identifiers:

measurement_id: stable identifier for one measurement row;
antibody_id: stable identifier for a heavy/light-chain pair;
endpoint_id: stable identifier for a property and endpoint definition;
structure_id: stable identifier for the source structure reference;
assay_metadata_file: path relative to this repository;
structure_file: path relative to this repository;
property: normalized broad property label;
source_row_index: original row index in the source table.

The numeric measurement label is stored in the original fitness column. value_definition identifies the endpoint definition, while assay_id identifies the assay unit. The broad property labels are aggregation, expression, immunogenicity, pharmacokinetics, polyreactivity, and thermostability for the FLAb2.0-derived data; PROPHET-Ab retains its five benchmark property labels in the same schema.

Feature-store contract

Each feature directory contains features.npy, metadata.csv, and, when available, feature_info.json. Row i in features.npy corresponds to row i in metadata.csv; measurement_id is the preferred join key. Feature arrays are stored as float32 and are not re-normalized by this release. Directory names identify the feature family, including esmc_600m, ism_3b, propermab_struct, and the assay-metadata embedding stores.

Splits and results

The split package is intentionally long-format: filter splits/split_assignments.csv by split_family and replicate, then join on measurement_id. The provided results are frozen outputs from the project analysis and are not required to reproduce the feature stores.

Downloading from Hugging Face

hf download yg3191/AbAssayBench \
  --repo-type dataset \
  --local-dir ./AbAssayBench

Loading example

from pathlib import Path
import numpy as np
import pandas as pd

root = Path("AbAssayBench")
measurements = pd.read_parquet(root / "tables/flab2_measurements.parquet")
feature_meta = pd.read_csv(root / "features/flab2/esmc_600m/metadata.csv")
features = np.load(root / "features/flab2/esmc_600m/features.npy", mmap_mode="r")
assert len(feature_meta) == features.shape[0]

The checksum file at manifests/checksums.sha256 covers the release files. The source-attribution manifest records the component datasets and their roles; source redistribution conditions should be checked before public reuse.

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